Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs78149779 chr12:56694817 A/G 9.63E-8 178 25.35 27.33 0.8 KM Plot
PCPG rs78172855 chr2:242551844 C/T 4.95E-5 175 25.87 28.42 20.2 KM Plot
PCPG rs78185587 chr1:40518752 C/T 7.51E-7 173 25.2 25.53 24.7 KM Plot
PCPG rs78200075 chr8:53845907 G/A 5.03E-5 172 24.47 27.27 20 KM Plot
PCPG rs78204283 chr2:176202555 T/C 0.000115 178 25.28 28.95 6.62 KM Plot
PCPG rs78213906 chr3:105765377 C/T 0.000135 177 25.87 17.02 22.68 KM Plot
PCPG rs78215681 chr16:56455880 C/A 0.000207 177 25 35.55 36.37 KM Plot
PCPG rs78220343 chr1:227956021 C/T 3.92E-11 177 25.7 21.38 10.3 KM Plot
PCPG rs78242786 chr2:176213358 C/T 0.000115 178 25.28 28.95 6.62 KM Plot
PCPG rs7825296 chr8:121435930 A/C 4.06E-6 178 27.2 25.33 19.87 KM Plot
PCPG rs78258737 chr2:121542919 T/C 0.000214 176 25.6 24.37 59.77 KM Plot
PCPG rs78260644 chr16:90069379 A/G 9.68E-9 174 25.87 20.37 6.62 KM Plot
PCPG rs7826746 chr8:121430858 C/T 9.59E-6 178 27.33 25 18.63 KM Plot
PCPG rs78282770 chr5:179483686 T/A 1.35E-5 176 24.37 29.57 25.17 KM Plot
PCPG rs78291645 chr8:121533640 C/A 6.94E-6 178 27.23 25.33 18.35 KM Plot